Here at the Kirby Center, we develop not only novel methods of acquiring images, but also innovative ways to analyze them. We also collect these data in publicly accessible databases, in order to promote the sharing of knowledge throughout the scientific community.

Software

Link to Our Collection of Software

One of our primary goals at the F. M. Kirby Research Center (FMKRC) is to develop tools for analyzing and understanding medical images.

  • fMRI
  • MRSpectroscopy
  • DICOM and REC
  • DTI Studio
  • Anatomy Analysis
  • Databases

Link to Our Collection of Databases

One of the key components of our National Research Resource Grant is the development of physiologically significant databases. Our data are publicly accessible, in order to promote search in medical image processing and analysis.

  • Brain Atlases
  • Developing Brain
  • Anatomy
  • Kirby 21

Available Documents

F.M. Kirby Research Center & Johns Hopkins University and Xiamen University

QSM Processing Tools

F.M. Kirby Research Center & Johns Hopkins University

Blood T1 T2 Calculation

F.M. Kirby Research Center & Johns Hopkins University

Chemical Exchange Saturation Transfer Imaging : Advances and Applications (2016) (login required)

F.M. Kirby Research Center & Johns Hopkins University

CEST Bloch Simulator

F.M. Kirby Research Center & Johns Hopkins University

CEST Data Processing Tools

F.M. Kirby Research Center & Department of Radiology, Johns Hopkins University

CSX DSX - Spectroscopy Analysis Software

Laboratory of Anatomical Brain MRI, Johns Hopkins University

MRI Studio Image Processing Software with Diffusion Tensor Calculation and Fiber Tracking

Image Analysis and Communications Lab, Department of Electrical & Computer Engineering, Johns Hopkins University

CATNAP - Coregistration, Adjustment, and Tensor-solving, a Nicely Automated Program

F.M. Kirby Research Center & Johns Hopkins University

Susceptability Weighted Imaging (SWI) Tool

AnatomyWorks

MriCloud - Cloud-based fully-automated MR image analysis tools

F.M. Kirby Research Center & Johns Hopkins University

Matlab Scripts

Cedrus Response Box

Create Checkerboard Stimulus Images Live Editor version Function version

Read and Plot Philips Frame Files (Mac only)

Read Philips Physiology Log Files - from Mathworks File Exchange, modified to handle new format